How do I set up payroll for my employees?

Short answerTo set up payroll you fix a salary structure (basic, HRA, allowances), register for PF, ESI and professional tax as applicable, and each month calculate gross pay, deduct PF/ESI/PT and TDS, pay net salary, and deposit the deductions. Payslips and statutory returns follow.

Salary structure + registrations

Define components, then register for PF/ESI/PT where applicable.

Monthly cycle

Compute, deduct, pay net salary, deposit dues by their due dates, and file returns.

Getting the structure and statutory pieces right

A well-designed salary structure does more than split a number: the ratio of basic to allowances drives PF (12% on basic plus DA), gratuity, and the tax value of components like HRA and LTA, so it’s worth setting thoughtfully at the start. Before the first payroll run, register for PF, ESI and professional tax wherever the thresholds are met, and obtain a TAN for deducting TDS on salaries. Each month the cycle is: compute gross pay, deduct PF, ESI and PT and TDS under Section 192, pay the net salary, then deposit PF and ESI by the 15th, TDS by the 7th, and PT by the state’s date. Quarterly, file Form 24Q for salary TDS; annually, issue Form 16 by 15 June and complete the PF and ESI annual formalities. Keeping an employee master with wages, joining and exit dates, and issuing monthly payslips, ties the whole cycle together and makes the year-end returns and audit straightforward. As headcount grows, payroll software or an outsourced run keeps the statutory pieces from slipping.

Talk to CA Vijay R Singh

Want your payroll set up and run for you? You can message him directly, or book a short call to talk through your situation.

This answer is general information for businesses, not professional advice. Tax rates, thresholds and forms change with each Finance Act — please confirm the current position for your own facts, or speak to us, before acting.

© 2026 Vijay R Singh & Co., Chartered Accountants | FRN 136869W | M.No. 153926 | +91 98607 23959 | info@cavijaysingh.com | Andheri East, Mumbai 400069

Book a Call